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суббота, 11 октября 2014 г.

Analyses of a fifth ancient English genome

Below are the results of analyses of ERS389799, the fifth of the five Iron Age and Anglo-Saxon samples from Hinxton, England.
The data indicate that ERS389799 was female. The mt-SNP calls show that she belonged to mitochondrial haplogroup H2a2a1.
ERS389799 didn’t have any of the K12b Gedrosia component. She had a bit less of the MDLP Iberian components than ERS389796, and a bit more of them than ERS389798.
The abstract for the paper on these ancient English genomes mentions that one of the two Iron Age genomes is high coverage. ERS389798 is the high coverage genome, so we know that ERS389798 is one of the two Iron Age samples. The abstract also mentions that the Iron Age samples had a greater affinity with Iberian samples. Since ERS389797 had such large amounts of the MDLP Iberian components, we can deduce that ERS389797 is the other Iron Age sample. The three samples from the Anglo-Saxon period are therefore ERS389795, ERS389796, and ERS389799. The abstract mentioned that the samples from the Anglo-Saxon period had a greater affinity with Finnish samples. We can see that this finding is due to ERS389795, which had large amounts of the MDLP Balto-Finnic components.
globe4
  • 88.51% European
  • 5.93% African
  • 5.57% Amerindian
  • 0.00% Asian

globe10
  • 85.96% Atlantic_Baltic
  • 6.00% Southern
  • 5.37% Neo_African
  • 1.41% Palaeo_African
  • 1.26% Amerindian
  • 0.00% Australasian
  • 0.00% East_Asian
  • 0.00% Siberian
  • 0.00% South_Asian
  • 0.00% West_Asian
globe13
  • 60.87% North_European
  • 31.98% Mediterranean
  • 5.02% West_African
  • 1.57% Palaeo_African
  • 0.55% Amerindian
  • 0.01% Southwest_Asian
  • 0.00% Arctic
  • 0.00% Australasian
  • 0.00% East_African
  • 0.00% East_Asian
  • 0.00% Siberian
  • 0.00% South_Asian
  • 0.00% West_Asian
K7b
  • 85.37% Atlantic_Baltic
  • 7.16% Southern
  • 6.86% African
  • 0.50% Siberian
  • 0.11% West_Asian
  • 0.00% East_Asian
  • 0.00% South_Asian
K10a
  • 67.95% Atlantic_Baltic
  • 25.60% Mediterranean
  • 5.34% Sub_Saharan
  • 1.11% Palaeoafrican
  • 0.00% East_Asian
  • 0.00% Red_Sea
  • 0.00% Siberian
  • 0.00% South_Asian
  • 0.00% Southeast_Asian
  • 0.00% West_Asian
K12b
  • 54.51% North_European
  • 38.02% Atlantic_Med
  • 5.01% Sub_Saharan
  • 2.32% East_African
  • 0.08% Northwest_African
  • 0.06% Caucasus
  • 0.00% East_Asian
  • 0.00% Gedrosia
  • 0.00% Siberian
  • 0.00% South_Asian
  • 0.00% Southeast_Asian
  • 0.00% Southwest_Asian
dv3
  • 59.73% West_European
  • 24.91% Mediterranean
  • 8.22% East_European
  • 5.41% Palaeo_African
  • 1.69% Neo_African
  • 0.03% Northwest_African
  • 0.00% East_African
  • 0.00% Northeast_Asian
  • 0.00% South_Asian
  • 0.00% Southeast_Asian
  • 0.00% Southwest_Asian
  • 0.00% West_Asian
MDLP K=5
  • 47.18% West-Eurasian
  • 42.46% Paleo-mediterranean
  • 9.97% Caucasian
  • 0.39% South-Asian
  • 0.00% East-Eurasian
MDLP K=6
  • 46.71% West-Eurasian
  • 38.86% Paleo-Mediterranean
  • 8.34% Caucasian
  • 6.08% North-West-Eurasian
  • 0.01% South-Asian
  • 0.00% East-Euroasian
MDLP K=7
  • 44.62% West-Eurasian
  • 37.77% Paleo-Mediterranean
  • 9.60% Paleo-Scandinavian
  • 7.98% Caucasian
  • 0.02% South-Central-Asian
  • 0.00% Altaic-Turkic
  • 0.00% Volga-Uralic
MDLP K=8
  • 48.49% West-European
  • 26.70% East-European
  • 12.52% Caucasian
  • 6.54% Paleo-Mediterranean
  • 5.72% Paleo-Scandinavian
  • 0.02% South-Central-Asian
  • 0.00% Altaic-Turkic
  • 0.00% Volga-Finnic
MDLP K=9
  • 48.53% West-European
  • 24.40% East-European
  • 12.44% Caucasian
  • 6.14% Paleo-Mediterranean
  • 5.83% Paleo-Scandinavian
  • 2.63% Paleo-Balkanic
  • 0.02% South-Central-Asian
  • 0.00% Altaic-Turkic
  • 0.00% Volga-Finnic
MDLP K=10
  • 52.96% British
  • 15.28% Iberian
  • 10.70% East-European
  • 6.88% Paleo-Mediterranean
  • 5.82% Paleo-North-European
  • 5.13% Caucasian
  • 2.83% Paleo-Balkanic
  • 0.40% South-Central-Asian
  • 0.00% Altaic-Turkic
  • 0.00% Volga-Finnic
MDLP K=11
  • 53.87% Celto-Germanic
  • 14.24% Iberian
  • 10.69% East-European
  • 6.43% Mediterranean
  • 5.61% Paleo-North-European
  • 5.18% Caucasian
  • 2.85% Paleo-Balkanic
  • 0.58% Volga-Uralic
  • 0.56% South-Central-Asian
  • 0.00% Altaic-Turkic
  • 0.00% Uralic-Permic
MDLP K=12
  • 54.58% Celto-Germanic
  • 13.81% Iberian
  • 11.87% East-European
  • 6.06% Paleo-Mediterranean
  • 6.03% Paleo-North-European
  • 4.22% Caucasian
  • 2.58% Paleo-Balkanic
  • 0.41% South-Central Asian
  • 0.41% Volga-Uralic
  • 0.01% Balto-Finnic
  • 0.00% Alatic-Turkic
  • 0.00% Uralic-Permic
MDLP K=13
  • 25.79% Paleo-Mediterranean
  • 23.05% Altaic
  • 13.07% East-Mediterranean
  • 12.15% Mediterrean
  • 8.28% Baltic-Finnic
  • 7.90% South-Central-Asian
  • 7.06% Celto-Germanic
  • 2.03% Paleo-North-European
  • 0.63% Caucasian
  • 0.02% Iberian
  • 0.00% East-European
  • 0.00% Uralic-Permic
  • 0.00% Volga-Uralic
MDLP K=14
  • 49.71% Celto-Germanic
  • 11.55% Iberian
  • 11.01% Balto-Slavic
  • 8.83% East-Mediterranean
  • 6.13% Paleo-Scandinavian
  • 5.21% Mediterranean
  • 3.51% Paleo-Mediterranean
  • 2.34% Paleo-Balkanic
  • 1.47% Caucasian
  • 0.15% South-Central-Asian
  • 0.08% Volga-Finnic
  • 0.00% Altaic
  • 0.00% Balto-Finnic
  • 0.00% Uralic-Permic
MDLP K=15
  • 50.64% Celto-Germanic
  • 11.28% Balto-Slavic
  • 11.00% Iberian
  • 8.17% East-Mediterranean
  • 6.19% Paleo-North-European
  • 5.23% Balkanic-1
  • 3.29% West-Mediterranean
  • 2.37% Balkanic-2
  • 1.49% Caucasian
  • 0.24% South-Central-Asian
  • 0.11% Volga-Uralic
  • 0.00% Balto-Finnic
  • 0.00% East-Altaic
  • 0.00% Uralic-Permic
  • 0.00% West-Altaic
MDLP World-22
  • 46.14% North-East-European
  • 38.16% Atlantic_Mediterranean_Neolithic
  • 11.02% North-European-Mesolithic
  • 3.02% Pygmy
  • 1.65% South-African
  • 0.01% Sub-Saharian
  • 0.00% Arctic-Amerind
  • 0.00% Austronesian
  • 0.00% East-Siberean
  • 0.00% East-South-Asian
  • 0.00% Indian
  • 0.00% Indo-Iranian
  • 0.00% Indo-Tibetan
  • 0.00% Melanesian
  • 0.00% Mesoamerican
  • 0.00% Near_East
  • 0.00% North-Amerind
  • 0.00% North-Siberean
  • 0.00% Paleo-Siberian
  • 0.00% Samoedic
  • 0.00% South-America_Amerind
  • 0.00% West-Asian
MDLP Ancient Roots K17
  • 51.19% Ancestral_East_European_ANE
  • 28.36% West_European_HG
  • 10.29% Caucasian-Basal
  • 7.22% Ancestral_Mediterranean_EEF
  • 1.61% Ancestral_Sami-Finnic
  • 0.29% Ancestral_West_Siberian
  • 0.27% Uralic
  • 0.16% Amerindian
  • 0.13% Ancestral_South_Indian
  • 0.11% Ancestral_North_Indian
  • 0.08% Ancestral_East_Siberian
  • 0.08% Melano-Austronesian
  • 0.06% African_Sub_Saharian
  • 0.04% Archaic_African
  • 0.04% Near-East-Basal
  • 0.04% South_East_Asian
  • 0.01% Circumpolar
MDLP Ancient Roots K18
  • 43.66% North_West_European
  • 25.57% East_European
  • 16.83% Caucasian
  • 12.09% Sami-Finnic
  • 0.87% Mediterranean
  • 0.85% Archaic_African
  • 0.11% Volga-Uralic
  • 0.00% Afroasiatic
  • 0.00% Amerindian
  • 0.00% Arctic
  • 0.00% East_African
  • 0.00% East_Siberian
  • 0.00% Melano-Austronesian
  • 0.00% Roma
  • 0.00% South_Central_Asian
  • 0.00% South_East_Asian
  • 0.00% South_Indian
  • 0.00% West_Siberian
MDLP K23b
  • 43.33% European_Hunters_Gatherers
  • 23.15% European_Early_Farmers
  • 16.11% Caucasian
  • 4.38% Near-East
  • 3.27% Austronesian
  • 2.61% North-African
  • 1.52% African-Pygmy
  • 1.31% Archaic-Human
  • 1.21% Archaic-African
  • 1.08% Subsaharian
  • 0.74% Ancestral-North-Eurasian
  • 0.62% Paleo-Siberian
  • 0.44% Ancestral-North-Indian
  • 0.11% East-African
  • 0.10% Austroloid
  • 0.01% South-East-Asian
  • 0.00% Altaiс
  • 0.00% Amerindian
  • 0.00% Ancestral-South-Indian
  • 0.00% Arctic
  • 0.00% East-Siberian
  • 0.00% Khoisan
  • 0.00% Melano-Polinesian