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пятница, 10 октября 2014 г.

Analyses of a fourth ancient English genome

Below are the results of analyses of ERS389798, the fourth of the five Iron Age and Anglo-Saxon samples from Hinxton, England.
The data indicate that ERS389798 was male. It can be inferred from the Y-SNP calls that he belonged to Y haplogroup R1b, and he may have belonged to R1b1a2a1a2c1g2-FGC3903/S5201/Y2890.
The mt-SNP calls show that ERS389798 belonged to mitochondrial haplogroup H1ag1.
ERS389798 had the ancestral allele of the SNP rs12203592 in the gene IRF4. The derived allele of this SNP is associated with lighter hair and eye color, and freckling.
He had the ancestral allele of the SNP rs1110400 in the gene MC1R. The derived allele of this SNP is associated with red hair.
He had the ancestral allele of the SNP rs1805007 in the gene MC1R. The derived allele is associated with red hair.
He had the ancestral allele of rs1805008 in MC1R. The derived allele of this SNP is also associated with red hair.
He had the ancestral allele of rs12913832 in HERC2. The derived allele is associated with blue eyes.
ERS389798 had 5.96% of the K12b Gedrosia component, which is a bit less than the 6.53% that ERS389796 had. He also had a bit less of the MDLP Iberian components than ERS389796 had.
globe4
  • 87.71% European
  • 6.39% Amerindian
  • 5.67% African
  • 0.23% Asian

globe10
  • 68.78% Atlantic_Baltic
  • 13.52% Southern
  • 7.11% West_Asian
  • 5.82% Neo_African
  • 2.81% South_Asian
  • 1.81% Australasian
  • 0.13% Amerindian
  • 0.02% Siberian
  • 0.00% East_Asian
  • 0.00% Palaeo_African
globe13
  • 47.15% North_European
  • 31.66% Mediterranean
  • 7.30% West_Asian
  • 3.86% East_African
  • 3.19% Southwest_Asian
  • 2.86% West_African
  • 1.76% Arctic
  • 1.51% Australasian
  • 0.71% South_Asian
  • 0.00% Amerindian
  • 0.00% East_Asian
  • 0.00% Palaeo_African
  • 0.00% Siberian
K7b
  • 64.34% Atlantic_Baltic
  • 16.13% Southern
  • 9.87% West_Asian
  • 6.01% African
  • 3.59% South_Asian
  • 0.06% Siberian
  • 0.01% East_Asian
K10a
  • 52.78% Atlantic_Baltic
  • 28.85% Mediterranean
  • 7.28% West_Asian
  • 5.74% Sub_Saharan
  • 3.07% South_Asian
  • 1.43% Red_Sea
  • 0.85% Siberian
  • 0.01% Southeast_Asian
  • 0.00% East_Asian
  • 0.00% Palaeoafrican
K12b
  • 39.04% North_European
  • 32.43% Atlantic_Med
  • 9.12% Caucasus
  • 5.96% Gedrosia
  • 3.54% Sub_Saharan
  • 2.90% South_Asian
  • 2.73% East_African
  • 2.63% Northwest_African
  • 1.63% Southwest_Asian
  • 0.02% Siberian
  • 0.00% East_Asian
  • 0.00% Southeast_Asian
dv3
  • 48.72% West_European
  • 23.25% Mediterranean
  • 9.04% East_European
  • 9.00% West_Asian
  • 3.85% Neo_African
  • 2.49% East_African
  • 1.52% Palaeo_African
  • 1.31% Northwest_African
  • 0.77% Northeast_Asian
  • 0.05% Southwest_Asian
  • 0.00% South_Asian
  • 0.00% Southeast_Asian
MDLP K=5
  • 36.55% Paleo-mediterranean
  • 34.70% West-Eurasian
  • 19.49% Caucasian
  • 4.94% South-Asian
  • 4.31% East-Eurasian
MDLP K=6
  • 37.11% West-Eurasian
  • 33.15% Paleo-Mediterranean
  • 18.18% Caucasian
  • 4.48% South-Asian
  • 4.29% East-Euroasian
  • 2.79% North-West-Eurasian
MDLP K=7
  • 37.39% West-Eurasian
  • 32.52% Paleo-Mediterranean
  • 18.08% Caucasian
  • 4.48% South-Central-Asian
  • 4.39% Altaic-Turkic
  • 2.50% Paleo-Scandinavian
  • 0.64% Volga-Uralic
MDLP K=8
  • 35.46% West-European
  • 23.99% East-European
  • 17.28% Caucasian
  • 13.95% Paleo-Mediterranean
  • 4.57% South-Central-Asian
  • 4.46% Altaic-Turkic
  • 0.15% Paleo-Scandinavian
  • 0.15% Volga-Finnic
MDLP K=9
  • 35.12% West-European
  • 22.88% East-European
  • 17.16% Caucasian
  • 14.30% Paleo-Mediterranean
  • 4.55% South-Central-Asian
  • 4.41% Altaic-Turkic
  • 1.32% Paleo-Balkanic
  • 0.15% Volga-Finnic
  • 0.11% Paleo-Scandinavian
MDLP K=10
  • 36.33% British
  • 14.39% Paleo-Mediterranean
  • 13.68% Iberian
  • 13.04% East-European
  • 11.89% Caucasian
  • 4.58% South-Central-Asian
  • 4.43% Altaic-Turkic
  • 1.38% Paleo-Balkanic
  • 0.25% Volga-Finnic
  • 0.03% Paleo-North-European
MDLP K=11
  • 36.19% Celto-Germanic
  • 14.12% Mediterranean
  • 12.98% Iberian
  • 12.65% East-European
  • 11.63% Caucasian
  • 4.34% South-Central-Asian
  • 3.73% Altaic-Turkic
  • 2.99% Uralic-Permic
  • 1.33% Paleo-Balkanic
  • 0.03% Paleo-North-European
  • 0.00% Volga-Uralic
MDLP K=12
  • 34.99% Celto-Germanic
  • 13.69% Paleo-Mediterranean
  • 12.75% Iberian
  • 11.52% East-European
  • 11.21% Caucasian
  • 4.32% South-Central Asian
  • 3.80% Balto-Finnic
  • 3.61% Alatic-Turkic
  • 2.87% Uralic-Permic
  • 1.24% Paleo-Balkanic
  • 0.00% Paleo-North-European
  • 0.00% Volga-Uralic
MDLP K=13
  • 22.06% Altaic
  • 16.81% Paleo-Mediterranean
  • 14.95% Celto-Germanic
  • 8.18% South-Central-Asian
  • 8.05% Iberian
  • 7.99% Mediterrean
  • 7.93% East-Mediterranean
  • 7.72% East-European
  • 4.35% Volga-Uralic
  • 1.96% Baltic-Finnic
  • 0.00% Caucasian
  • 0.00% Paleo-North-European
  • 0.00% Uralic-Permic
MDLP K=14
  • 32.03% Celto-Germanic
  • 15.73% Mediterranean
  • 11.15% Iberian
  • 10.89% East-Mediterranean
  • 10.16% Balto-Slavic
  • 5.19% Caucasian
  • 3.89% South-Central-Asian
  • 3.49% Balto-Finnic
  • 3.35% Altaic
  • 2.78% Uralic-Permic
  • 1.00% Paleo-Balkanic
  • 0.34% Paleo-Mediterranean
  • 0.00% Paleo-Scandinavian
  • 0.00% Volga-Finnic
MDLP K=15
  • 32.33% Celto-Germanic
  • 15.76% Balkanic-1
  • 11.03% Iberian
  • 10.73% East-Mediterranean
  • 10.33% Balto-Slavic
  • 5.00% Caucasian
  • 3.82% South-Central-Asian
  • 3.47% Balto-Finnic
  • 2.54% Uralic-Permic
  • 2.39% West-Altaic
  • 1.53% East-Altaic
  • 0.99% Balkanic-2
  • 0.08% West-Mediterranean
  • 0.00% Paleo-North-European
  • 0.00% Volga-Uralic
MDLP World-22
  • 45.42% North-East-European
  • 34.33% Atlantic_Mediterranean_Neolithic
  • 4.40% West-Asian
  • 3.91% Near_East
  • 3.58% Sub-Saharian
  • 2.99% Austronesian
  • 2.49% Samoedic
  • 1.55% Arctic-Amerind
  • 1.24% North-European-Mesolithic
  • 0.07% Melanesian
  • 0.01% North-Amerind
  • 0.00% East-Siberean
  • 0.00% East-South-Asian
  • 0.00% Indian
  • 0.00% Indo-Iranian
  • 0.00% Indo-Tibetan
  • 0.00% Mesoamerican
  • 0.00% North-Siberean
  • 0.00% Paleo-Siberian
  • 0.00% Pygmy
  • 0.00% South-African
  • 0.00% South-America_Amerind
MDLP Ancient Roots K17
  • 40.41% Ancestral_East_European_ANE
  • 22.12% West_European_HG
  • 15.85% Ancestral_Mediterranean_EEF
  • 9.29% Caucasian-Basal
  • 3.71% African_Sub_Saharian
  • 1.62% Archaic_African
  • 1.62% Near-East-Basal
  • 1.50% Melano-Austronesian
  • 1.31% Ancestral_North_Indian
  • 0.76% Ancestral_South_Indian
  • 0.68% Ancestral_West_Siberian
  • 0.47% Circumpolar
  • 0.22% Ancestral_Sami-Finnic
  • 0.18% Uralic
  • 0.11% Amerindian
  • 0.08% Ancestral_East_Siberian
  • 0.07% South_East_Asian
MDLP Ancient Roots K18
  • 35.35% North_West_European
  • 25.85% East_European
  • 15.03% Caucasian
  • 10.24% Mediterranean
  • 5.58% East_African
  • 2.87% South_Indian
  • 2.78% Arctic
  • 1.08% Afroasiatic
  • 0.88% Melano-Austronesian
  • 0.25% Archaic_African
  • 0.05% South_Central_Asian
  • 0.03% West_Siberian
  • 0.00% Amerindian
  • 0.00% East_Siberian
  • 0.00% Roma
  • 0.00% Sami-Finnic
  • 0.00% South_East_Asian
  • 0.00% Volga-Uralic
MDLP K23b
  • 32.46% European_Hunters_Gatherers
  • 31.80% European_Early_Farmers
  • 13.98% Caucasian
  • 6.77% Ancestral-North-Indian
  • 6.56% Ancestral-North-Eurasian
  • 4.69% Subsaharian
  • 1.35% North-African
  • 0.97% East-African
  • 0.54% Arctic
  • 0.29% Ancestral-South-Indian
  • 0.22% Melano-Polinesian
  • 0.16% Austroloid
  • 0.09% Near-East
  • 0.07% Paleo-Siberian
  • 0.01% African-Pygmy
  • 0.01% Amerindian
  • 0.01% Archaic-Human
  • 0.01% East-Siberian
  • 0.01% South-East-Asian
  • 0.00% Altaiс
  • 0.00% Archaic-African
  • 0.00% Austronesian
  • 0.00% Khoisan
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