Phenotype SNPs from ancient Iran

Below are derived allele counts and total numbers of reads for SNPs that have a large effect on phenotype for five new ancient genomes from the Zagros Mountains of Iran. Nonzero derived allele counts are in bold. Note that small derived allele counts may be due to DNA damage.
ASIP, rs2424984, Veddoid brown skin

Sample  Period           Date BC    D/T
AH1     Early Neolithic  Unknown    3/3
AH2     Early Neolithic  8205–7756  1/1
AH4     Early Neolithic  8204–7755  0/2
WC1     Early Neolithic  7455–7082  16/16

ASIP, rs6058017, Veddoid brown skin

Sample  Period           Date BC    D/T
AH1     Early Neolithic  Unknown    2/2
WC1     Early Neolithic  7455–7082  15/15
F38     Early Iron Age   971–832    0/2

EDAR, rs3827760, Mongoloid teeth, hair, etc.

Sample  Period           Date BC    D/T
AH1     Early Neolithic  Unknown    0/1
AH2     Early Neolithic  8205–7756  0/1
AH4     Early Neolithic  8204–7755  0/2
WC1     Early Neolithic  7455–7082  0/14
F38     Early Iron Age   971–832    0/5

IRF4, rs12203592, light hair and eyes, freckling

Sample  Period           Date BC    D/T
AH1     Early Neolithic  Unknown    0/1
AH2     Early Neolithic  8205–7756  0/1
AH4     Early Neolithic  8204–7755  0/3
WC1     Early Neolithic  7455–7082  0/22
F38     Early Iron Age   971–832    0/4

KITLG, rs12821256, blond hair

Sample  Period           Date BC    D/T
AH2     Early Neolithic  8205–7756  0/2
AH4     Early Neolithic  8204–7755  0/1
WC1     Early Neolithic  7455–7082  0/12
F38     Early Iron Age   971–832    0/2

KITLG, rs642742, Veddoid brown skin

Sample  Period           Date BC    D/T
AH1     Early Neolithic  Unknown    1/1
AH2     Early Neolithic  8205–7756  1/1
AH4     Early Neolithic  8204–7755  1/2
WC1     Early Neolithic  7455–7082  16/16
F38     Early Iron Age   971–832    2/2

MC1R, rs1110400, red hair

Sample  Period           Date BC    D/T
AH1     Early Neolithic  Unknown    0/2
AH2     Early Neolithic  8205–7756  0/1
AH4     Early Neolithic  8204–7755  0/3
WC1     Early Neolithic  7455–7082  0/10

MC1R, rs11547464, red hair

Sample  Period           Date BC    D/T
AH1     Early Neolithic  Unknown    0/3
AH2     Early Neolithic  8205–7756  0/2
AH4     Early Neolithic  8204–7755  1/2
WC1     Early Neolithic  7455–7082  0/15
F38     Early Iron Age   971–832    0/1

MC1R, rs1805005, blond hair, fair skin

Sample  Period           Date BC    D/T
AH1     Early Neolithic  Unknown    0/2
AH2     Early Neolithic  8205–7756  0/1
AH4     Early Neolithic  8204–7755  0/1
WC1     Early Neolithic  7455–7082  0/12
F38     Early Iron Age   971–832    0/5

MC1R, rs1805006, red hair, fair skin

Sample  Period           Date BC    D/T
AH1     Early Neolithic  Unknown    0/1
AH2     Early Neolithic  8205–7756  0/1
AH4     Early Neolithic  8204–7755  0/3
WC1     Early Neolithic  7455–7082  0/14
F38     Early Iron Age   971–832    0/2

MC1R, rs1805007, red hair, fair skin

Sample  Period           Date BC    D/T
AH1     Early Neolithic  Unknown    0/3
AH2     Early Neolithic  8205–7756  0/1
AH4     Early Neolithic  8204–7755  0/3
WC1     Early Neolithic  7455–7082  0/14
F38     Early Iron Age   971–832    0/1

MC1R, rs1805008, red hair, fair skin

Sample  Period           Date BC    D/T
AH1     Early Neolithic  Unknown    0/2
AH2     Early Neolithic  8205–7756  0/2
AH4     Early Neolithic  8204–7755  0/2
WC1     Early Neolithic  7455–7082  0/8
F38     Early Iron Age   971–832    0/1

MC1R, rs1805009, red hair, fair skin

Sample  Period           Date BC    D/T
AH1     Early Neolithic  Unknown    0/1
AH2     Early Neolithic  8205–7756  0/1
AH4     Early Neolithic  8204–7755  0/2
WC1     Early Neolithic  7455–7082  1/15
F38     Early Iron Age   971–832    0/1

MCM6, rs182549, ability to digest milk

Sample  Period           Date BC    D/T
AH1     Early Neolithic  Unknown    1/3
AH2     Early Neolithic  8205–7756  0/1
AH4     Early Neolithic  8204–7755  2/5
WC1     Early Neolithic  7455–7082  1/19
F38     Early Iron Age   971–832    0/2

MCM6, rs4988235, ability to digest milk

Sample  Period           Date BC    D/T
AH1     Early Neolithic  Unknown    0/1
AH2     Early Neolithic  8205–7756  0/1
AH4     Early Neolithic  8204–7755  0/3
WC1     Early Neolithic  7455–7082  2/11
F38     Early Iron Age   971–832    0/2

OCA2, rs1800407, green or hazel eyes

Sample  Period           Date BC    D/T
AH1     Early Neolithic  Unknown    0/1
AH4     Early Neolithic  8204–7755  0/1
WC1     Early Neolithic  7455–7082  1/19
F38     Early Iron Age   971–832    0/2

OCA2, rs1800414, Mongoloid light skin

Sample  Period           Date BC    D/T
AH1     Early Neolithic  Unknown    0/2
AH4     Early Neolithic  8204–7755  0/1
WC1     Early Neolithic  7455–7082  0/15
F38     Early Iron Age   971–832    0/3

OCA2/HERC2, rs12913832, blue eyes

Sample  Period           Date BC    D/T
AH1     Early Neolithic  Unknown    0/1
AH2     Early Neolithic  8205–7756  0/3
WC1     Early Neolithic  7455–7082  7/20

SLC24A5, rs1426654, Caucasoid light skin

Sample  Period           Date BC    D/T
AH1     Early Neolithic  Unknown    2/4
AH2     Early Neolithic  8205–7756  0/4
AH4     Early Neolithic  8204–7755  2/2
WC1     Early Neolithic  7455–7082  5/13
F38     Early Iron Age   971–832    4/4

SLC45A2, rs16891982, Caucasoid light skin

Sample  Period           Date BC    D/T
AH1     Early Neolithic  Unknown    0/1
AH2     Early Neolithic  8205–7756  0/1
AH4     Early Neolithic  8204–7755  0/1
WC1     Early Neolithic  7455–7082  0/13

TYR, rs1042602, light skin, absence of freckles

Sample  Period           Date BC    D/T
AH1     Early Neolithic  Unknown    0/2
AH2     Early Neolithic  8205–7756  0/1
AH4     Early Neolithic  8204–7755  0/1
WC1     Early Neolithic  7455–7082  0/19
F38     Early Iron Age   971–832    0/3

TYR, rs1393350, blond hair, blue eyes

Sample  Period           Date BC    D/T
AH1     Early Neolithic  Unknown    0/1
AH2     Early Neolithic  8205–7756  0/1
WC1     Early Neolithic  7455–7082  0/16
F38     Early Iron Age   971–832    0/5

TYRP1, rs2733831, light hair and eyes

Sample  Period           Date BC    D/T
AH1     Early Neolithic  Unknown    0/1
WC1     Early Neolithic  7455–7082  0/7
F38     Early Iron Age   971–832    0/2

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