Phenotype SNPs from the Neolithic Aegean

Below are derived allele counts and total numbers of reads for SNPs that have a large effect on phenotype for five genomes from the Neolithic Aegean. Nonzero derived allele counts are in bold. Note that small derived allele counts may be due to DNA damage.

ASIP, rs2424984, Veddoid brown skin

Sample        Region      Period           Years BC     D/T
Barcın 31     Asia Minor  Early Neolithic  6,419–6,238  2/2
Barcın 8      Asia Minor  Early Neolithic  6,212–6,030  3/3
Paliambela 7  Greece      Late Neolithic   4,452–4,350  2/2
Kleitos 10    Greece      Final Neolithic  4,230–3,995  3/3

ASIP, rs6058017, Veddoid brown skin

Sample      Region      Period           Years BC     D/T
Barcın 31   Asia Minor  Early Neolithic  6,419–6,238  5/5
Barcın 8    Asia Minor  Early Neolithic  6,212–6,030  5/5
Kleitos 10  Greece      Final Neolithic  4,230–3,995  1/1

EDAR, rs3827760, Mongoloid teeth, hair, etc.

Sample        Region      Period           Years BC     D/T
Revenia 5     Greece      Early Neolithic  6,438–6,264  0/2
Barcın 31     Asia Minor  Early Neolithic  6,419–6,238  0/4
Barcın 8      Asia Minor  Early Neolithic  6,212–6,030  0/7
Paliambela 7  Greece      Late Neolithic   4,452–4,350  0/1
Kleitos 10    Greece      Final Neolithic  4,230–3,995  0/2

IRF4, rs12203592, light hair and eyes, freckling

Sample        Region      Period           Years BC     D/T
Barcın 31     Asia Minor  Early Neolithic  6,419–6,238  0/5
Barcın 8      Asia Minor  Early Neolithic  6,212–6,030  0/8
Paliambela 7  Greece      Late Neolithic   4,452–4,350  0/1
Kleitos 10    Greece      Final Neolithic  4,230–3,995  0/3

KITLG, rs12821256, blond hair

Sample        Region      Period           Years BC     D/T
Revenia 5     Greece      Early Neolithic  6,438–6,264  0/1
Barcın 8      Asia Minor  Early Neolithic  6,212–6,030  0/9
Paliambela 7  Greece      Late Neolithic   4,452–4,350  0/5
Kleitos 10    Greece      Final Neolithic  4,230–3,995  0/3

KITLG, rs642742, Veddoid brown skin

Sample      Region      Period           Years BC     D/T
Revenia 5   Greece      Early Neolithic  6,438–6,264  1/1
Barcın 31   Asia Minor  Early Neolithic  6,419–6,238  1/7
Barcın 8    Asia Minor  Early Neolithic  6,212–6,030  12/13
Kleitos 10  Greece      Final Neolithic  4,230–3,995  3/3

MC1R, rs1110400, red hair

Sample      Region      Period           Years BC     D/T
Barcın 31   Asia Minor  Early Neolithic  6,419–6,238  0/1
Barcın 8    Asia Minor  Early Neolithic  6,212–6,030  0/9
Kleitos 10  Greece      Final Neolithic  4,230–3,995  0/1

MC1R, rs11547464, red hair

Sample        Region      Period           Years BC     D/T
Revenia 5     Greece      Early Neolithic  6,438–6,264  0/1
Barcın 31     Asia Minor  Early Neolithic  6,419–6,238  0/2
Barcın 8      Asia Minor  Early Neolithic  6,212–6,030  1/10
Paliambela 7  Greece      Late Neolithic   4,452–4,350  0/1
Kleitos 10    Greece      Final Neolithic  4,230–3,995  0/5

MC1R, rs1805005, blond hair, fair skin

Sample        Region      Period           Years BC     D/T
Barcın 31     Asia Minor  Early Neolithic  6,419–6,238  0/3
Barcın 8      Asia Minor  Early Neolithic  6,212–6,030  0/5
Paliambela 7  Greece      Late Neolithic   4,452–4,350  0/1
Kleitos 10    Greece      Final Neolithic  4,230–3,995  0/5

MC1R, rs1805006, red hair, fair skin

Sample      Region      Period           Years BC     D/T
Barcın 31   Asia Minor  Early Neolithic  6,419–6,238  0/3
Barcın 8    Asia Minor  Early Neolithic  6,212–6,030  0/8
Kleitos 10  Greece      Final Neolithic  4,230–3,995  0/4

MC1R, rs1805007, red hair, fair skin

Sample      Region      Period           Years BC     D/T
Revenia 5   Greece      Early Neolithic  6,438–6,264  0/1
Barcın 31   Asia Minor  Early Neolithic  6,419–6,238  1/1
Barcın 8    Asia Minor  Early Neolithic  6,212–6,030  0/8
Kleitos 10  Greece      Final Neolithic  4,230–3,995  0/2

MC1R, rs1805008, red hair, fair skin

Sample      Region      Period           Years BC     D/T
Barcın 31   Asia Minor  Early Neolithic  6,419–6,238  1/3
Barcın 8    Asia Minor  Early Neolithic  6,212–6,030  1/7
Kleitos 10  Greece      Final Neolithic  4,230–3,995  0/1

MC1R, rs1805009, red hair, fair skin

Sample      Region      Period           Years BC     D/T
Revenia 5   Greece      Early Neolithic  6,438–6,264  0/1
Barcın 31   Asia Minor  Early Neolithic  6,419–6,238  0/3
Barcın 8    Asia Minor  Early Neolithic  6,212–6,030  0/8
Kleitos 10  Greece      Final Neolithic  4,230–3,995  0/2

MCM6, rs182549, ability to digest milk

Sample      Region      Period           Years BC     D/T
Revenia 5   Greece      Early Neolithic  6,438–6,264  0/3
Barcın 31   Asia Minor  Early Neolithic  6,419–6,238  0/3
Barcın 8    Asia Minor  Early Neolithic  6,212–6,030  0/7
Kleitos 10  Greece      Final Neolithic  4,230–3,995  0/4

MCM6, rs4988235, ability to digest milk

Sample        Region      Period           Years BC     D/T
Barcın 31     Asia Minor  Early Neolithic  6,419–6,238  0/4
Barcın 8      Asia Minor  Early Neolithic  6,212–6,030  0/9
Paliambela 7  Greece      Late Neolithic   4,452–4,350  0/4
Kleitos 10    Greece      Final Neolithic  4,230–3,995  1/4

OCA2, rs1800407, green or hazel eyes

Sample      Region      Period           Years BC     D/T
Barcın 31   Asia Minor  Early Neolithic  6,419–6,238  0/1
Barcın 8    Asia Minor  Early Neolithic  6,212–6,030  0/6
Kleitos 10  Greece      Final Neolithic  4,230–3,995  0/1

OCA2, rs1800414, Mongoloid light skin

Sample        Region      Period           Years BC     D/T
Barcın 31     Asia Minor  Early Neolithic  6,419–6,238  0/8
Barcın 8      Asia Minor  Early Neolithic  6,212–6,030  0/6
Paliambela 7  Greece      Late Neolithic   4,452–4,350  0/1
Kleitos 10    Greece      Final Neolithic  4,230–3,995  0/8

OCA2/HERC2, rs12913832, blue eyes

Sample        Region      Period           Years BC     D/T
Revenia 5     Greece      Early Neolithic  6,438–6,264  0/2
Barcın 31     Asia Minor  Early Neolithic  6,419–6,238  0/4
Barcın 8      Asia Minor  Early Neolithic  6,212–6,030  0/12
Paliambela 7  Greece      Late Neolithic   4,452–4,350  1/3
Kleitos 10    Greece      Final Neolithic  4,230–3,995  3/4

SLC24A5, rs1426654, Caucasoid light skin

Sample        Region      Period           Years BC     D/T
Revenia 5     Greece      Early Neolithic  6,438–6,264  5/5
Barcın 31     Asia Minor  Early Neolithic  6,419–6,238  7/7
Barcın 8      Asia Minor  Early Neolithic  6,212–6,030  10/11
Paliambela 7  Greece      Late Neolithic   4,452–4,350  1/1
Kleitos 10    Greece      Final Neolithic  4,230–3,995  4/4

SLC45A2, rs16891982, Caucasoid light skin

Sample        Region      Period           Years BC     D/T
Revenia 5     Greece      Early Neolithic  6,438–6,264  0/2
Barcın 31     Asia Minor  Early Neolithic  6,419–6,238  4/6
Barcın 8      Asia Minor  Early Neolithic  6,212–6,030  8/11
Paliambela 7  Greece      Late Neolithic   4,452–4,350  3/3
Kleitos 10    Greece      Final Neolithic  4,230–3,995  2/2

TYR, rs1042602, light skin, absence of freckles

Sample        Region      Period           Years BC     D/T
Revenia 5     Greece      Early Neolithic  6,438–6,264  0/3
Barcın 31     Asia Minor  Early Neolithic  6,419–6,238  0/7
Barcın 8      Asia Minor  Early Neolithic  6,212–6,030  0/10
Paliambela 7  Greece      Late Neolithic   4,452–4,350  0/3
Kleitos 10    Greece      Final Neolithic  4,230–3,995  1/2

TYR, rs1393350, blond hair, blue eyes

Sample        Region      Period           Years BC     D/T
Revenia 5     Greece      Early Neolithic  6,438–6,264  0/3
Barcın 31     Asia Minor  Early Neolithic  6,419–6,238  0/3
Barcın 8      Asia Minor  Early Neolithic  6,212–6,030  0/15
Paliambela 7  Greece      Late Neolithic   4,452–4,350  0/3
Kleitos 10    Greece      Final Neolithic  4,230–3,995  0/3

TYRP1, rs2733831, light hair and eyes

Sample      Region      Period           Years BC     D/T
Revenia 5   Greece      Early Neolithic  6,438–6,264  0/1
Barcın 31   Asia Minor  Early Neolithic  6,419–6,238  9/9
Barcın 8    Asia Minor  Early Neolithic  6,212–6,030  3/10
Kleitos 10  Greece      Final Neolithic  4,230–3,995  0/3

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